Figure 1.
Figure 1. TXA is an active site inhibitor of uPA. (A) The residual enzyme activity of tPA (Actilyse; Boehringer Ingelheim), Plm (Haematologic Technologies), plasma kallikrein (KLK; residue 381-638 recombinantly expressed and purified from Expi293 cells),12 and uPA (urokinase medac) was measured in the presence of TXA and EACA (0-125 mM) in 50 mM Tris-HCl pH 7.4, 100 mM NaCl, and 0.01% Tween-80 at 450 nm, as previously described.21 IC50 derived from the linear absorbance range and Ki are summarized in supplemental Table 1. The Michaelis-Menten constant (Km) and the apparent Km values for uPA in the presence of 0 to 15 mM TXA were also determined with 0 to 0.5 mM S-2444, and data were plotted using GraphPad Prism 7.0 to calculate Ki (supplemental Figure 1; supplemental Table 1). (B) The residual clot lysis activity (reciprocal plot of the normalized 50% clot lysis time in supplemental Figure 4) was recorded in the presence of 1 μM Plm, 1 μM Plg plus tPA, or 1 μM Plg plus uPA at the concentrations indicated. Each reaction consists of a 100-μL fibrin clot preformed by incubating human fibrinogen (12.5 μM; Enzyme Research Laboratories) and thrombin (55 nM; Diagnostic Reagents) in a lysis buffer (40 mM Tris, 75 mM NaCl, 3 mM CaCl2, 0.01% Tween-20) at 37°C for 3 hours. An additional 100 μL of lysis buffer containing Plm or Plg plus tPA/uPA in the presence of 0 to 25 mM TXA was added to start the lysis; the progress of clot lysis was monitored using a nephelometer (BMG LABTECH), which records every minute for 5.5 hours at 37°C. Fifty percent clot lysis time was determined using an online application (https://drclongstaff.shinyapps.io/clotlysisCL/).22 (C) During fibrin clot lysis, Plm and uPA enzyme activities were also measured in the presence of TXA (0-50 mM), Plm substrate (H-Ala-Phe-Lys-AMC; Bachem), or uPA substrate (Glutaryl-Gly-Arg-AMC; Sekisui Diagnostics) in 100 μL of lysis buffer, as described in panel B. Enzyme activity was recorded using a FLUOstar Omega (BMG) at 37°C; excitation and emission were 355 nm and 460 nm, respectively. All data points represent the mean ± standard deviation of a minimum of 3 independent experiments. (D) Cocrystal structure of uPA and TXA. uPASP (serine protease domain of human uPA, residue 164-431) was expressed and purified from Expi293 cells, as previously described.12 uPASP was activated to the 2-chain form (tc-uPASP) by Plm (Haematologic Technologies), concentrated to 10 mg/mL, and mixed with 20 mM TXA for crystallization trials. Crystals were obtained in the presence of 0.03 M NaNO3, 0.03 M Na2HPO4, 0.03 M (NH4)2SO4, 0.1 M Tris-bicine pH 8.5, 25% (weight-to-volume ratio) polyethylene glycol monomethyl ether 500, and 10% (weight-to-volume ratio) polyethylene glycol 20 000 at 20°C. The electrostatic surface representation of uPA (basic, blue; acidic, red) is shown, with key binding residues (cyan sticks) to TXA (green sticks) labeled. There are 4 binary complex molecules in the asymmetric unit, and the model of monomer A with TXA is shown. Data collection and processing were performed as previously described (supplemental Table 2).12 Further information is shown in supplemental Figure 5.

TXA is an active site inhibitor of uPA. (A) The residual enzyme activity of tPA (Actilyse; Boehringer Ingelheim), Plm (Haematologic Technologies), plasma kallikrein (KLK; residue 381-638 recombinantly expressed and purified from Expi293 cells),12  and uPA (urokinase medac) was measured in the presence of TXA and EACA (0-125 mM) in 50 mM Tris-HCl pH 7.4, 100 mM NaCl, and 0.01% Tween-80 at 450 nm, as previously described.21  IC50 derived from the linear absorbance range and Ki are summarized in supplemental Table 1. The Michaelis-Menten constant (Km) and the apparent Km values for uPA in the presence of 0 to 15 mM TXA were also determined with 0 to 0.5 mM S-2444, and data were plotted using GraphPad Prism 7.0 to calculate Ki (supplemental Figure 1; supplemental Table 1). (B) The residual clot lysis activity (reciprocal plot of the normalized 50% clot lysis time in supplemental Figure 4) was recorded in the presence of 1 μM Plm, 1 μM Plg plus tPA, or 1 μM Plg plus uPA at the concentrations indicated. Each reaction consists of a 100-μL fibrin clot preformed by incubating human fibrinogen (12.5 μM; Enzyme Research Laboratories) and thrombin (55 nM; Diagnostic Reagents) in a lysis buffer (40 mM Tris, 75 mM NaCl, 3 mM CaCl2, 0.01% Tween-20) at 37°C for 3 hours. An additional 100 μL of lysis buffer containing Plm or Plg plus tPA/uPA in the presence of 0 to 25 mM TXA was added to start the lysis; the progress of clot lysis was monitored using a nephelometer (BMG LABTECH), which records every minute for 5.5 hours at 37°C. Fifty percent clot lysis time was determined using an online application (https://drclongstaff.shinyapps.io/clotlysisCL/).22  (C) During fibrin clot lysis, Plm and uPA enzyme activities were also measured in the presence of TXA (0-50 mM), Plm substrate (H-Ala-Phe-Lys-AMC; Bachem), or uPA substrate (Glutaryl-Gly-Arg-AMC; Sekisui Diagnostics) in 100 μL of lysis buffer, as described in panel B. Enzyme activity was recorded using a FLUOstar Omega (BMG) at 37°C; excitation and emission were 355 nm and 460 nm, respectively. All data points represent the mean ± standard deviation of a minimum of 3 independent experiments. (D) Cocrystal structure of uPA and TXA. uPASP (serine protease domain of human uPA, residue 164-431) was expressed and purified from Expi293 cells, as previously described.12  uPASP was activated to the 2-chain form (tc-uPASP) by Plm (Haematologic Technologies), concentrated to 10 mg/mL, and mixed with 20 mM TXA for crystallization trials. Crystals were obtained in the presence of 0.03 M NaNO3, 0.03 M Na2HPO4, 0.03 M (NH4)2SO4, 0.1 M Tris-bicine pH 8.5, 25% (weight-to-volume ratio) polyethylene glycol monomethyl ether 500, and 10% (weight-to-volume ratio) polyethylene glycol 20 000 at 20°C. The electrostatic surface representation of uPA (basic, blue; acidic, red) is shown, with key binding residues (cyan sticks) to TXA (green sticks) labeled. There are 4 binary complex molecules in the asymmetric unit, and the model of monomer A with TXA is shown. Data collection and processing were performed as previously described (supplemental Table 2).12  Further information is shown in supplemental Figure 5.

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