Table 2.

Missense mutations identified in compound heterozygotes with nonsense or frameshift mutations encoded in the second allele of PRF1


PFP genotype ID

Amino acid substitution

Amino acid

Predicted domain

Lytic activity, % of WT PFP

Age at HLH diagnosis, mo
Rodent
Flounder
H9  Gly45Glu   Gly   Gly   N-terminal   0   8  
I9  Asp70Tyr   Asp   Asp   ?   0   96  
J9  Cys73Arg   Cys   Cys   ?   0   4  
K9  Phe157Val   Phe   Tyr   ?   0   2  
L9  His222Gln   His   His   α-helix   0   3  
M14  Arg232Cys*  Arg   Ser   α-helix   0   72  
N8  Arg232His*  Arg   Ser   α-helix   15-20   27, 144  
O7  Asn252Ser  Asp   Glu   ?   100   1, 1  
P8  Glu261Lys   Glu   Ser   ?   0   NR  
Q9  Asp313Val   Asp   Asp   ?   15   NR  
R9
 
Gln481Pro
 
Gln
 
Glu
 
C2
 
< 7
 
2
 

PFP genotype ID

Amino acid substitution

Amino acid

Predicted domain

Lytic activity, % of WT PFP

Age at HLH diagnosis, mo
Rodent
Flounder
H9  Gly45Glu   Gly   Gly   N-terminal   0   8  
I9  Asp70Tyr   Asp   Asp   ?   0   96  
J9  Cys73Arg   Cys   Cys   ?   0   4  
K9  Phe157Val   Phe   Tyr   ?   0   2  
L9  His222Gln   His   His   α-helix   0   3  
M14  Arg232Cys*  Arg   Ser   α-helix   0   72  
N8  Arg232His*  Arg   Ser   α-helix   15-20   27, 144  
O7  Asn252Ser  Asp   Glu   ?   100   1, 1  
P8  Glu261Lys   Glu   Ser   ?   0   NR  
Q9  Asp313Val   Asp   Asp   ?   15   NR  
R9
 
Gln481Pro
 
Gln
 
Glu
 
C2
 
< 7
 
2
 

The original reference for each patient PFP genotype is shown in the first column as a superscript. Amino acid conservation is derived from the amino acid sequence alignment of mammalian and flounder perforins, as in PredictProtein28  (EMBL-Heidelberg). PFP indicates perforin; ?, unknown domain; and NR, not reported.

*

Shown in Figure 6.

Shown in Figure 2.

Shown in Figure 3.

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