Up-regulated genes in day-6 Hex−/− embryoid bodies
P . | Fold change . | Gene . |
|---|---|---|
| .019536 | 1.50 | X70764: ELKL motif kinase |
| .025304 | 1.50 | S78454: Metal response element binding transcription factor 2 |
| .101605 | 1.51 | D26046: AT motif binding factor 1 |
| .009346 | 1.51 | X71978: Fused toes |
| .008006 | 1.51 | X80171: Placental growth factor |
| .017930 | 1.53 | Y15910: Dia protein NAP-22 membrane attached signal protein 1 |
| .031838 | 1.53 | L47480: BMP-4 gene |
| .024428 | 1.53 | AF069953: G protein gamma 3 subunit (Gng3) |
| .015906 | 1.54 | AA733868: CD2 antigen (cytoplasmic tail) binding protein 2 (Cd2bp2) |
| .012801 | 1.54 | AW123115: Reticulon 1 (Rtn1) |
| .001579 | 1.55 | AF041472: Ataxin-2 |
| .001456 | 1.56 | AV276058: SCA2 |
| .022530 | 1.56 | U92885: LERK-3 (Epl3) |
| .022782 | 1.56 | M87802: Homeobox D |
| .003225 | 1.57 | AJ002366: Transcription factor TFIIH |
| .102759 | 1.57 | AA600647: Rag D |
| .005952 | 1.58 | AA795486: HIV-1 Rev binding protein |
| .010549 | 1.59 | AW048233: Ets2 repressor factor |
| .027050 | 1.59 | AW125031: Chemokine-like super family 6 |
| .017595 | 1.59 | AI848841: Unknown Mus musculus cDNA |
| .003082 | 1.60 | D76440: Necdin |
| .009446 | 1.61 | AA189677: Similar to Luc7 homolog (S cerevisiae) |
| .000965 | 1.62 | AV171460: Unknown Mus musculus 13 days embryo forelimb cDNA |
| .058823 | 1.63 | U36778: Tal1 interrupting locus (Sil) |
| .003858 | 1.63 | AB020886: SSeCKS |
| .000481 | 1.64 | AJ001166: PXMP1-L (PMP69, P70R) |
| .000044 | 1.65 | AA268823: CD59B |
| .023294 | 1.66 | AI838398: Capicua (Cic) |
| .010314 | 1.66 | AI848050: Kruppel-like factor 9 (Klf9) |
| .008523 | 1.67 | AF039021: Pericentriolar material 1 (Pcm1) |
| .016667 | 1.67 | AW121328: T-Box transcription factor 3 |
| .013826 | 1.67 | AA981581: Unknown thymus cDNA |
| .027554 | 1.67 | U05252: Nuclear matrix attachment DNA-binding protein SATB1 |
| .012993 | 1.68 | U88567: Secreted frizzled-related protein sFRP-2 (Sfrp2) |
| .001160 | 1.69 | D83966: Protein tyrosine phosphatase, nonreceptor type 13 |
| .022100 | 1.73 | X68363: POU domain, class 2, transcription factor 1 |
| .000117 | 1.73 | X96639: Exostoses-1 |
| .011775 | 1.77 | AI042802: Solute carrier family 6 (neurotransmitter transporter, taurine), member 6 (Slc6a6) |
| .001983 | 1.77 | AW061234: Unknown Mus musculus cDNA |
| .002101 | 1.77 | AW121960: Unknown Mus musculus adult male aorta cDNA |
| .007887 | 1.77 | U13837: Vacuolar adenosine triphosphatase subunit A |
| .029744 | 1.78 | X73230: Arylsulfatase A |
| .007617 | 1.78 | AJ002730: Ubiquitously transcribed tetratricopeptide repeat |
| .003410 | 1.78 | AW046101: Unknown protein, contains gaunylate kinase domain |
| .013035 | 1.80 | X75285: Fibulin 2 |
| .013581 | 1.80 | AB024538: Islr (immunoglobulin superfamily containing leucine-rich repeat) |
| .006885 | 1.81 | AW046038: Transcriptional coactivator (Taz gene) |
| .000209 | 1.82 | U06944: Praja1 |
| .000066 | 1.86 | AF022432: Mus musculus matrix metalloproteinase-14 (Mmp14) |
| .001276 | 1.87 | X68363: POU domain, class 2, transcription factor 1 |
| .009344 | 1.89 | D10011: Glutamate receptor, ionotropic, kainate 5 (gamma 2) |
| .001754 | 1.89 | U22325: Faciogenital dysplasia homolog |
| .009816 | 1.90 | X78989: Testin |
| .007261 | 1.91 | M19380: Calmodulin 3 |
| .000211 | 1.93 | X83569: Neuronatin |
| .030738 | 1.94 | AJ243608: Ns7 protein, ortholog of the human nM15 gene, melanoma antigen, family L, 2 (Magel2) |
| .008798 | 1.95 | AW122897: Frizzled homolog 4 (Drosophila) |
| .021436 | 2.00 | U02098: Purine-rich element binding protein A (Pura) |
| .029488 | 2.01 | AA711516: Similar to splicing factor, arginine/serine-rich 7 |
| .017521 | 2.02 | AI839004: Long-chain fatty-acyl elongase (Lce) |
| .008565 | 2.04 | AI852838: Dlk1 gene for delta-like and Gtl2 gene |
| .024052 | 2.05 | AW121323: Similar to yeast URM1: ubiquitin-like protein |
| .008120 | 2.07 | U14941: ELF-1 |
| .002046 | 2.08 | X16672: Type IIB intracisternal A-particle element encoding integrase and gag |
| .013533 | 2.08 | M97590: Protein tyrosine phosphatase-1 (PTP-1) |
| .003222 | 2.08 | AF056187: Insulin-like growth factor I receptor |
| .003911 | 2.15 | AI851048: Rab6, RAS family member |
| .005097 | 2.17 | X65138: Eph receptor A4 |
| .006860 | 2.18 | AA759910: Similar to e(y)2 homolog, 12 days embryo male wolffian duct |
| .009977 | 2.26 | AW260482: NMDA receptor-regulated gene 1 (Narg1) |
| .031771 | 2.31 | AW048581: Ectonucleotide pyrophosphatase/phosphodiesterase 5 |
| .008367 | 2.37 | AI642417: Unknown Mus musculus cDNA, 3 end |
| .001441 | 2.49 | AW107922: SRY-box containing gene 11 (Sox11) |
| .030771 | 2.49 | U82122: Ubiquitin conjugating enzyme E3A |
| .022656 | 2.49 | M95200: Vascular endothelial growth factor (VEGF) |
| .004646 | 2.53 | D50086: Neuropilin |
| .007256 | 2.62 | AI645050: Sartine nexin 5 |
| .015276 | 2.62 | AA795284: Hypothetical protein, containing Tol transport and WD40 domains |
| .004607 | 2.75 | X60136: Trans-acting transcription factor 1 |
| .004792 | 2.77 | AI503821: Zinc finger protein 144 (Zfp144) |
| .001863 | 2.88 | U92437: Phosphatase and tensin homolog |
| .003833 | 2.93 | U85614: SRG3 |
| .012519 | 2.97 | AW209098: IQ motif containing GTPase activating protein 1 |
| .031953 | 3.13 | AW212708: Unknown Mus musculus 10, 11 days embryo whole body cDNA, contains FOG zinc fingers |
| .032497 | 3.26 | X84037: E-selectin ligand-1 |
| .003827 | 3.28 | AI551087: Mus musculus hypothetical gene supported by BC020078, containing elF4 domains |
| .013229 | 3.38 | AI449034: RE1-silencing transcription factor (Rest) |
| .006480 | 3.39 | AI853712: Kruppel-like factor 7 (Klf-7) |
| .001798 | 3.45 | AI843739: Transducin beta-like 1X protein |
| .000640 | 3.46 | AW123697: CD99 (E2 antigen, Mic2 protein) |
| .025527 | 3.52 | C80249: Unknown Mus musculus blastocyst cDNA |
| .006833 | 4.32 | AV299153: DEAD/H box polypeptide 36 protein (Ddx36) |
| .001673 | 4.70 | C79248: Unknown Mus musculus adult pancreas islet cells and blastocyst cDNA |
| .007836 | 5.08 | AI854614: Bromodomain-containing protein BRD4 |
P . | Fold change . | Gene . |
|---|---|---|
| .019536 | 1.50 | X70764: ELKL motif kinase |
| .025304 | 1.50 | S78454: Metal response element binding transcription factor 2 |
| .101605 | 1.51 | D26046: AT motif binding factor 1 |
| .009346 | 1.51 | X71978: Fused toes |
| .008006 | 1.51 | X80171: Placental growth factor |
| .017930 | 1.53 | Y15910: Dia protein NAP-22 membrane attached signal protein 1 |
| .031838 | 1.53 | L47480: BMP-4 gene |
| .024428 | 1.53 | AF069953: G protein gamma 3 subunit (Gng3) |
| .015906 | 1.54 | AA733868: CD2 antigen (cytoplasmic tail) binding protein 2 (Cd2bp2) |
| .012801 | 1.54 | AW123115: Reticulon 1 (Rtn1) |
| .001579 | 1.55 | AF041472: Ataxin-2 |
| .001456 | 1.56 | AV276058: SCA2 |
| .022530 | 1.56 | U92885: LERK-3 (Epl3) |
| .022782 | 1.56 | M87802: Homeobox D |
| .003225 | 1.57 | AJ002366: Transcription factor TFIIH |
| .102759 | 1.57 | AA600647: Rag D |
| .005952 | 1.58 | AA795486: HIV-1 Rev binding protein |
| .010549 | 1.59 | AW048233: Ets2 repressor factor |
| .027050 | 1.59 | AW125031: Chemokine-like super family 6 |
| .017595 | 1.59 | AI848841: Unknown Mus musculus cDNA |
| .003082 | 1.60 | D76440: Necdin |
| .009446 | 1.61 | AA189677: Similar to Luc7 homolog (S cerevisiae) |
| .000965 | 1.62 | AV171460: Unknown Mus musculus 13 days embryo forelimb cDNA |
| .058823 | 1.63 | U36778: Tal1 interrupting locus (Sil) |
| .003858 | 1.63 | AB020886: SSeCKS |
| .000481 | 1.64 | AJ001166: PXMP1-L (PMP69, P70R) |
| .000044 | 1.65 | AA268823: CD59B |
| .023294 | 1.66 | AI838398: Capicua (Cic) |
| .010314 | 1.66 | AI848050: Kruppel-like factor 9 (Klf9) |
| .008523 | 1.67 | AF039021: Pericentriolar material 1 (Pcm1) |
| .016667 | 1.67 | AW121328: T-Box transcription factor 3 |
| .013826 | 1.67 | AA981581: Unknown thymus cDNA |
| .027554 | 1.67 | U05252: Nuclear matrix attachment DNA-binding protein SATB1 |
| .012993 | 1.68 | U88567: Secreted frizzled-related protein sFRP-2 (Sfrp2) |
| .001160 | 1.69 | D83966: Protein tyrosine phosphatase, nonreceptor type 13 |
| .022100 | 1.73 | X68363: POU domain, class 2, transcription factor 1 |
| .000117 | 1.73 | X96639: Exostoses-1 |
| .011775 | 1.77 | AI042802: Solute carrier family 6 (neurotransmitter transporter, taurine), member 6 (Slc6a6) |
| .001983 | 1.77 | AW061234: Unknown Mus musculus cDNA |
| .002101 | 1.77 | AW121960: Unknown Mus musculus adult male aorta cDNA |
| .007887 | 1.77 | U13837: Vacuolar adenosine triphosphatase subunit A |
| .029744 | 1.78 | X73230: Arylsulfatase A |
| .007617 | 1.78 | AJ002730: Ubiquitously transcribed tetratricopeptide repeat |
| .003410 | 1.78 | AW046101: Unknown protein, contains gaunylate kinase domain |
| .013035 | 1.80 | X75285: Fibulin 2 |
| .013581 | 1.80 | AB024538: Islr (immunoglobulin superfamily containing leucine-rich repeat) |
| .006885 | 1.81 | AW046038: Transcriptional coactivator (Taz gene) |
| .000209 | 1.82 | U06944: Praja1 |
| .000066 | 1.86 | AF022432: Mus musculus matrix metalloproteinase-14 (Mmp14) |
| .001276 | 1.87 | X68363: POU domain, class 2, transcription factor 1 |
| .009344 | 1.89 | D10011: Glutamate receptor, ionotropic, kainate 5 (gamma 2) |
| .001754 | 1.89 | U22325: Faciogenital dysplasia homolog |
| .009816 | 1.90 | X78989: Testin |
| .007261 | 1.91 | M19380: Calmodulin 3 |
| .000211 | 1.93 | X83569: Neuronatin |
| .030738 | 1.94 | AJ243608: Ns7 protein, ortholog of the human nM15 gene, melanoma antigen, family L, 2 (Magel2) |
| .008798 | 1.95 | AW122897: Frizzled homolog 4 (Drosophila) |
| .021436 | 2.00 | U02098: Purine-rich element binding protein A (Pura) |
| .029488 | 2.01 | AA711516: Similar to splicing factor, arginine/serine-rich 7 |
| .017521 | 2.02 | AI839004: Long-chain fatty-acyl elongase (Lce) |
| .008565 | 2.04 | AI852838: Dlk1 gene for delta-like and Gtl2 gene |
| .024052 | 2.05 | AW121323: Similar to yeast URM1: ubiquitin-like protein |
| .008120 | 2.07 | U14941: ELF-1 |
| .002046 | 2.08 | X16672: Type IIB intracisternal A-particle element encoding integrase and gag |
| .013533 | 2.08 | M97590: Protein tyrosine phosphatase-1 (PTP-1) |
| .003222 | 2.08 | AF056187: Insulin-like growth factor I receptor |
| .003911 | 2.15 | AI851048: Rab6, RAS family member |
| .005097 | 2.17 | X65138: Eph receptor A4 |
| .006860 | 2.18 | AA759910: Similar to e(y)2 homolog, 12 days embryo male wolffian duct |
| .009977 | 2.26 | AW260482: NMDA receptor-regulated gene 1 (Narg1) |
| .031771 | 2.31 | AW048581: Ectonucleotide pyrophosphatase/phosphodiesterase 5 |
| .008367 | 2.37 | AI642417: Unknown Mus musculus cDNA, 3 end |
| .001441 | 2.49 | AW107922: SRY-box containing gene 11 (Sox11) |
| .030771 | 2.49 | U82122: Ubiquitin conjugating enzyme E3A |
| .022656 | 2.49 | M95200: Vascular endothelial growth factor (VEGF) |
| .004646 | 2.53 | D50086: Neuropilin |
| .007256 | 2.62 | AI645050: Sartine nexin 5 |
| .015276 | 2.62 | AA795284: Hypothetical protein, containing Tol transport and WD40 domains |
| .004607 | 2.75 | X60136: Trans-acting transcription factor 1 |
| .004792 | 2.77 | AI503821: Zinc finger protein 144 (Zfp144) |
| .001863 | 2.88 | U92437: Phosphatase and tensin homolog |
| .003833 | 2.93 | U85614: SRG3 |
| .012519 | 2.97 | AW209098: IQ motif containing GTPase activating protein 1 |
| .031953 | 3.13 | AW212708: Unknown Mus musculus 10, 11 days embryo whole body cDNA, contains FOG zinc fingers |
| .032497 | 3.26 | X84037: E-selectin ligand-1 |
| .003827 | 3.28 | AI551087: Mus musculus hypothetical gene supported by BC020078, containing elF4 domains |
| .013229 | 3.38 | AI449034: RE1-silencing transcription factor (Rest) |
| .006480 | 3.39 | AI853712: Kruppel-like factor 7 (Klf-7) |
| .001798 | 3.45 | AI843739: Transducin beta-like 1X protein |
| .000640 | 3.46 | AW123697: CD99 (E2 antigen, Mic2 protein) |
| .025527 | 3.52 | C80249: Unknown Mus musculus blastocyst cDNA |
| .006833 | 4.32 | AV299153: DEAD/H box polypeptide 36 protein (Ddx36) |
| .001673 | 4.70 | C79248: Unknown Mus musculus adult pancreas islet cells and blastocyst cDNA |
| .007836 | 5.08 | AI854614: Bromodomain-containing protein BRD4 |
See footnote to Table 1.