Alignment and characterization of GC-rich motifs in the Dβ1 promoter
Site . | Sequences . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
-35 | C | C | T | A | T | G | G | G | A | G | G | G | T | C | C | T | |||||||||||||||
-281 | G | A | G | A | A | G | G | G | C | G | G | A | T | A | C | A | |||||||||||||||
-314 | T | C | A | T | A | G | G | G | T | G | G | T | T | C | C | C | |||||||||||||||
Consensus | - | - | - | A/T | A/T | G | G | G | N | G | G | N | T | N | C | - | |||||||||||||||
Binding | - | - | - | C | A/c | a | G | G | t | t | T | C | - | - | - | - | |||||||||||||||
Nonbinding | - | - | - | - | - | T/C | T | C | - | - | - | - | - | - | - | - |
Site . | Sequences . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
-35 | C | C | T | A | T | G | G | G | A | G | G | G | T | C | C | T | |||||||||||||||
-281 | G | A | G | A | A | G | G | G | C | G | G | A | T | A | C | A | |||||||||||||||
-314 | T | C | A | T | A | G | G | G | T | G | G | T | T | C | C | C | |||||||||||||||
Consensus | - | - | - | A/T | A/T | G | G | G | N | G | G | N | T | N | C | - | |||||||||||||||
Binding | - | - | - | C | A/c | a | G | G | t | t | T | C | - | - | - | - | |||||||||||||||
Nonbinding | - | - | - | - | - | T/C | T | C | - | - | - | - | - | - | - | - |
Bases in lowercase have a reduced ability to compete with wild-type sequences. — indicates not applicable.