Analysis of clonotypes present in the colon and corresponding clonotype frequencies in the input splenic population
| Vβ family . | Clonotype name . | No. of sequences (colon) . | % of sequences (colon) . | No. of sequences (spleen) . | % of sequences (spleen) . |
|---|---|---|---|---|---|
| Vβ2 | sAa.1 | 87 | 70.7 | 5 | 0.08 |
| aGPn.43 | 15 | 12.2 | 0 | < 0.02 | |
| sGTFs.431 | 14 | 11.4 | 0 | < 0.02 | |
| sAHREs.2261 | 3 | 2.4 | 0 | < 0.02 | |
| aGVn.343 | 2 | 1.6 | 0 | < 0.02 | |
| sANRESGNTl.22611311 | 1 | 0.81 | 0 | < 0.02 | |
| aGDt.42 | 1 | 0.81 | 10 | 0.16 | |
| Vβ8.3 | dLa.3 | 37 | 50.7 | 0 | < 0.3 |
| dDWVs.211 | 14 | 19.2 | 0 | < 0.3 | |
| dGGe.44 | 8 | 10.9 | 0 | < 0.3 | |
| sATIs.431 | 5 | 6.8 | 0 | < 0.3 | |
| sDRGLq.2424 | 3 | 4.1 | 0 | < 0.3 | |
| sSRGQDt.623 22 | 2 | 2.7 | 2 | 0.62 | |
| dGDRGRDDe.426451 | 1 | 1.4 | 0 | < 0.3 | |
| aISDRGLq.252424 | 1 | 1.4 | 0 | < 0.3 | |
| sDRGIq.2422 | 1 | 1.4 | 0 | < 0.3 | |
| sEGy.14 | 1 | 1.4 | 1 | 0.31 | |
| Vβ16 | lKDGn.223 | 62 | 53.0 | 69 | 0.60 |
| lAGDg.341 | 34 | 29.1 | 507 | 4.4 | |
| lRGDq.442 | 13 | 11.1 | 0 | < 0.0001 | |
| lGLGGq.4642 | 4 | 3.4 | 0 | < 0.0001 | |
| sGQFs.321 | 1 | 0.86 | 6 | < 0.0001 | |
| sFDWGe.1213 | 1 | 0.85 | 37 | 0.32 | |
| lVGRe.446 | 1 | 0.85 | 191 | 1.7 | |
| lRWGy.412 | 1 | 0.85 | 35 | 0.30 |
| Vβ family . | Clonotype name . | No. of sequences (colon) . | % of sequences (colon) . | No. of sequences (spleen) . | % of sequences (spleen) . |
|---|---|---|---|---|---|
| Vβ2 | sAa.1 | 87 | 70.7 | 5 | 0.08 |
| aGPn.43 | 15 | 12.2 | 0 | < 0.02 | |
| sGTFs.431 | 14 | 11.4 | 0 | < 0.02 | |
| sAHREs.2261 | 3 | 2.4 | 0 | < 0.02 | |
| aGVn.343 | 2 | 1.6 | 0 | < 0.02 | |
| sANRESGNTl.22611311 | 1 | 0.81 | 0 | < 0.02 | |
| aGDt.42 | 1 | 0.81 | 10 | 0.16 | |
| Vβ8.3 | dLa.3 | 37 | 50.7 | 0 | < 0.3 |
| dDWVs.211 | 14 | 19.2 | 0 | < 0.3 | |
| dGGe.44 | 8 | 10.9 | 0 | < 0.3 | |
| sATIs.431 | 5 | 6.8 | 0 | < 0.3 | |
| sDRGLq.2424 | 3 | 4.1 | 0 | < 0.3 | |
| sSRGQDt.623 22 | 2 | 2.7 | 2 | 0.62 | |
| dGDRGRDDe.426451 | 1 | 1.4 | 0 | < 0.3 | |
| aISDRGLq.252424 | 1 | 1.4 | 0 | < 0.3 | |
| sDRGIq.2422 | 1 | 1.4 | 0 | < 0.3 | |
| sEGy.14 | 1 | 1.4 | 1 | 0.31 | |
| Vβ16 | lKDGn.223 | 62 | 53.0 | 69 | 0.60 |
| lAGDg.341 | 34 | 29.1 | 507 | 4.4 | |
| lRGDq.442 | 13 | 11.1 | 0 | < 0.0001 | |
| lGLGGq.4642 | 4 | 3.4 | 0 | < 0.0001 | |
| sGQFs.321 | 1 | 0.86 | 6 | < 0.0001 | |
| sFDWGe.1213 | 1 | 0.85 | 37 | 0.32 | |
| lVGRe.446 | 1 | 0.85 | 191 | 1.7 | |
| lRWGy.412 | 1 | 0.85 | 35 | 0.30 |
Numbers in bold denote clonotypes present in the colon that were shared by multiple mice (as depicted in Figure 3) and the corresponding frequency of these sequences in the input splenic T-cell population and in the colon.