Table 3

Biologic processes (GO terms) in individual methylation groups

GO_IDGO term, biologic process
Hypermethylated genes (methylated in lymphomas and unmethylated in controls)  
    GO:0007202 Phospholipase C activation 
    GO:0007200 G-protein signaling, coupled to IP3 second messenger (phospholipase C activating) 
    GO:0048015 Phosphoinositide-mediated signaling 
    GO:0007186 G-protein–coupled receptor protein signaling pathway 
Differentially methylated genes between lymphoma subgroups (and unmethylated in controls)  
    GO:0051291 Protein hetero-oligomerization 
    GO:0045596 Negative regulation of cell differentiation 
    GO:0042095 Interferon-gamma biosynthetic process 
    GO:0045072 Regulation of interferon-gamma biosynthetic process 
    GO:0032609 Interferon-gamma production 
    GO:0051093 Negative regulation of developmental process 
GO_IDGO term, biologic process
Hypermethylated genes (methylated in lymphomas and unmethylated in controls)  
    GO:0007202 Phospholipase C activation 
    GO:0007200 G-protein signaling, coupled to IP3 second messenger (phospholipase C activating) 
    GO:0048015 Phosphoinositide-mediated signaling 
    GO:0007186 G-protein–coupled receptor protein signaling pathway 
Differentially methylated genes between lymphoma subgroups (and unmethylated in controls)  
    GO:0051291 Protein hetero-oligomerization 
    GO:0045596 Negative regulation of cell differentiation 
    GO:0042095 Interferon-gamma biosynthetic process 
    GO:0045072 Regulation of interferon-gamma biosynthetic process 
    GO:0032609 Interferon-gamma production 
    GO:0051093 Negative regulation of developmental process 

Genes assigned to the gene groups with methylation in lymphomas but not controls were analyzed for their involvement in biologic processes according to the GO terminology. Significant biologic processes are shown (P < .01). A complete itemization is presented in Table S7.

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