Venous thrombosis prediction using genetic, nongenetic, and combined risk scores
. | MEGA (N = 7092) . | LETS (N = 881) . | ||
---|---|---|---|---|
AUC (95% CI) . | Nagelkerke pseudo r2 . | AUC (95% CI) . | Nagelkerke pseudo r2 . | |
31-SNP risk score | 0.71 (0.69-0.72) | 0.161 | 0.69 (0.65-0.72) | 0.149 |
5-SNP risk score | 0.69 (0.67-0.70) | 0.135 | 0.67 (0.64-0.71) | 0.138 |
Nongenetic risk score | 0.77 (0.76-0.78) | 0.288 | 0.71 (0.68-0.74) | 0.200 |
Combined risk score | 0.82 (0.81-0.83) | 0.378 | 0.77 (0.74-0.80) | 0.292 |
. | MEGA (N = 7092) . | LETS (N = 881) . | ||
---|---|---|---|---|
AUC (95% CI) . | Nagelkerke pseudo r2 . | AUC (95% CI) . | Nagelkerke pseudo r2 . | |
31-SNP risk score | 0.71 (0.69-0.72) | 0.161 | 0.69 (0.65-0.72) | 0.149 |
5-SNP risk score | 0.69 (0.67-0.70) | 0.135 | 0.67 (0.64-0.71) | 0.138 |
Nongenetic risk score | 0.77 (0.76-0.78) | 0.288 | 0.71 (0.68-0.74) | 0.200 |
Combined risk score | 0.82 (0.81-0.83) | 0.378 | 0.77 (0.74-0.80) | 0.292 |
The LETS study was used as a validation set.