Table 2

Venous thrombosis prediction using genetic, nongenetic, and combined risk scores

MEGA (N = 7092)
LETS (N = 881)
AUC (95% CI)Nagelkerke pseudo r2AUC (95% CI)Nagelkerke pseudo r2
31-SNP risk score 0.71 (0.69-0.72) 0.161 0.69 (0.65-0.72) 0.149 
5-SNP risk score 0.69 (0.67-0.70) 0.135 0.67 (0.64-0.71) 0.138 
Nongenetic risk score 0.77 (0.76-0.78) 0.288 0.71 (0.68-0.74) 0.200 
Combined risk score 0.82 (0.81-0.83) 0.378 0.77 (0.74-0.80) 0.292 
MEGA (N = 7092)
LETS (N = 881)
AUC (95% CI)Nagelkerke pseudo r2AUC (95% CI)Nagelkerke pseudo r2
31-SNP risk score 0.71 (0.69-0.72) 0.161 0.69 (0.65-0.72) 0.149 
5-SNP risk score 0.69 (0.67-0.70) 0.135 0.67 (0.64-0.71) 0.138 
Nongenetic risk score 0.77 (0.76-0.78) 0.288 0.71 (0.68-0.74) 0.200 
Combined risk score 0.82 (0.81-0.83) 0.378 0.77 (0.74-0.80) 0.292 

The LETS study was used as a validation set.

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