New recurrent copy number alterations
Genomic lesion . | Paired patients, n . | Unpaired patients, n . | Frequency within cohort . | Start . | Stop . | Segment length . | Genes . |
---|---|---|---|---|---|---|---|
del(15)(q15.1) | 1* | 7† | 4% | 39 745 774 | 39 816 254 | 70 480 | MGA |
del(10)(q24) | 2* | 4* | 2% | 104 146 465 | 105 040 096 | 893 631 | 19 genes (eg, NFKB2) |
del(14)(q24.3) | 2 | 3‡ | 2% | 75 152 557 | 75 614 215 | 461 658 | FLVCR2, C14orf1, TTLL5, BCYRN1, TGFB3, C14orf179 |
del(1)(q23.3) | 2 | 1 | 1% | 158 997 196 | 159 441 807 | 444 611 | 19 genes |
del(1)(q42.12) | 2 | 1 | 1% | 223 854 863 | 224 490 349 | 635 486 | 12 genes |
del(3)(p21.31) | 2 | 2 | 1% | 47 565 887 | 49 821 882 | 1 255 995 | 58 genes (eg, ATRIP) |
del(6)(p22.1) | 3 | 2 | 1% | 26 121 993 | 26 343 281 | 221 288 | Histone cluster, HFE |
gain(6)(p25.3) | 2 | 1 | 1% | 94 649 | 1 485 307 | 1 390 658 | DUSP22, IRF4, EXOC2, HUS1B, LOC285768, FOXQ1, FOXF2 |
del(9)(q13-q21.11) | 2 | 3 | 1% | 70 139 836 | 70 788 159 | 648 323 | PGM5, C9orf71, PIP5K1B |
del(14)(q13.2) | 2 | 1% | 34 107 436 | 35 183 612 | 1 076 176 | 11 genes (eg, NFKBIA) |
Genomic lesion . | Paired patients, n . | Unpaired patients, n . | Frequency within cohort . | Start . | Stop . | Segment length . | Genes . |
---|---|---|---|---|---|---|---|
del(15)(q15.1) | 1* | 7† | 4% | 39 745 774 | 39 816 254 | 70 480 | MGA |
del(10)(q24) | 2* | 4* | 2% | 104 146 465 | 105 040 096 | 893 631 | 19 genes (eg, NFKB2) |
del(14)(q24.3) | 2 | 3‡ | 2% | 75 152 557 | 75 614 215 | 461 658 | FLVCR2, C14orf1, TTLL5, BCYRN1, TGFB3, C14orf179 |
del(1)(q23.3) | 2 | 1 | 1% | 158 997 196 | 159 441 807 | 444 611 | 19 genes |
del(1)(q42.12) | 2 | 1 | 1% | 223 854 863 | 224 490 349 | 635 486 | 12 genes |
del(3)(p21.31) | 2 | 2 | 1% | 47 565 887 | 49 821 882 | 1 255 995 | 58 genes (eg, ATRIP) |
del(6)(p22.1) | 3 | 2 | 1% | 26 121 993 | 26 343 281 | 221 288 | Histone cluster, HFE |
gain(6)(p25.3) | 2 | 1 | 1% | 94 649 | 1 485 307 | 1 390 658 | DUSP22, IRF4, EXOC2, HUS1B, LOC285768, FOXQ1, FOXF2 |
del(9)(q13-q21.11) | 2 | 3 | 1% | 70 139 836 | 70 788 159 | 648 323 | PGM5, C9orf71, PIP5K1B |
del(14)(q13.2) | 2 | 1% | 34 107 436 | 35 183 612 | 1 076 176 | 11 genes (eg, NFKBIA) |