Selection of genes whose up-regulation by LPS or Pam3CSK4 is inhibited by TSA in BMDMs
| Adhesion molecule . | Innate receptor . | Signal transduction . | Phosphatase . | Transcription regulator . | Cytokine, chemokine, and growth factor . | Cytokine, chemokine, and growth factor receptor . | Antigen processing and presentation . | Ubiquiti-nation . | Others . |
|---|---|---|---|---|---|---|---|---|---|
| Alcam | Aim1 | Csnk1a1 | Dusp1 (Mkp-1) | Atf3 | Ccl4 | Ccrl2 | Atg16l | Ubc | Calmp |
| Cd47 | Birc (cIAP2) | Irak2 | Dusp4 | Atf4 | Ccl7 | Crlf3 | Ctsz | Ube1l | C1qa |
| Icam1 | Card4 (Nod1) | Irak3 | Dusp16 | Atf5 | Ccl8 | Csf3r | H2-DMb1 | Ube2c | C1r |
| Itga4 | Carc15 (Nod2) | Jak1 | Ptpn6 | Batf | Ccl9 | Ednrb | H2-Ea | Ube2d3 | H2-Bf |
| Itga5 | Cd14 | Jak2 | Ptpn9 | Bcl3 | Ccl12 | Ifnar1 | H2-Eb1 | Ube2e2 | F10 |
| Itgal | Cias1 (Nlrp3) | Lck | Ptpn12 | Bcl7c | Ccl17 | Ifnar2 | H2-M3 | Ube2j1 | Mmp9 |
| Itgax | Clec2d | Map3k7ip2 | Bcl10 | Ccl22 | Ifngr2 | H2-Q10 | Ube2j2 | Mmp14 | |
| Itgb3 | Clec4a2 | Map3k8 (Tpl2) | Cebpb | Ccl24 | Il1rl1 | H2-Q7 | Ube2l6 | Mmp25 | |
| Vcam1 | Clec4d | Mapkapk2 | Cebpd | Ccrl2 | Il2rg | Psma3 | Ube2m | Nos2 | |
| Clec4e | Myd88 | Cited2 | Csf2 | Il4ra | Psma4 | Ube2r2 | Pde4b | ||
| Eif2ak2 (Pkr) | Pias1 | Hmgb2 | Cklfsf3 | Il10rb | Psma5 | Ube2v1 | Pld2 | ||
| Fcer1g | Prkr | Ikbke | Cksfs6 | Il13ra1 | Psma6 | Ubl3 | Ptger4 | ||
| Fcgr2b | Ptk2 | Irf1 | Cklfsf7 | Pdfrl | Psmb7 | Ubtd1 | Ptges | ||
| Frp1 | Ripk2 | Irf2 | Cxcl2 | Ptafr | Psmb8 | Ufm1 | Ptgir | ||
| Fpr-rs2 | Socs1 | Irf5 | Cxcl5 | Tnfrsf1a | Psmb9 | Usp12 | Ptgs2 | ||
| Ifih1 (Mda5) | Stk19 | Irf7 | Cxcl12 | Tnfrsf14 | Psmb10 | Usp18 | Sod2 | ||
| Ly96 (Md-2) | Syk | Junb | Cxcl16 | Psme1 | Usp24 | Txn1 | |||
| Mefv (Pyrin) | Tank | Klf6 | Cx3cl1 | Psme2b | Usp42 | Tnfrsf5 (Cd40) | |||
| Msr1 | Tbk1 | Nfkb1 | Edn1 | Tap1 | |||||
| Pycard | Ticam2 | Nfkb2 | Il1a | Tap2 | |||||
| Scarb2 | Traf1 | Nfkbib | Il1rn | Tapbp | |||||
| Ddx58 (RIG-l) | Trim30 | Nfkbie | Il6 | Tapbpl | |||||
| Tlr1 | Nfkbiz | Il12a | |||||||
| Tlr2 | Pias1 | Il12b | |||||||
| Tlr3 | Rel | Il13ra1 | |||||||
| Tlr6 | Rela | Il15 | |||||||
| Tlr7 | Relb | Il18 | |||||||
| Tlr9 | Spic | Il23a | |||||||
| Stat3 | Il27 | ||||||||
| Stat5a | Inhba | ||||||||
| Ltb | |||||||||
| Pbef1 | |||||||||
| Tnf | |||||||||
| Tmpo | |||||||||
| Tnfaip3 (A20) | |||||||||
| Tnfsf4 (OX-40L) | |||||||||
| Tnfsf9 (4-1BBL) |
| Adhesion molecule . | Innate receptor . | Signal transduction . | Phosphatase . | Transcription regulator . | Cytokine, chemokine, and growth factor . | Cytokine, chemokine, and growth factor receptor . | Antigen processing and presentation . | Ubiquiti-nation . | Others . |
|---|---|---|---|---|---|---|---|---|---|
| Alcam | Aim1 | Csnk1a1 | Dusp1 (Mkp-1) | Atf3 | Ccl4 | Ccrl2 | Atg16l | Ubc | Calmp |
| Cd47 | Birc (cIAP2) | Irak2 | Dusp4 | Atf4 | Ccl7 | Crlf3 | Ctsz | Ube1l | C1qa |
| Icam1 | Card4 (Nod1) | Irak3 | Dusp16 | Atf5 | Ccl8 | Csf3r | H2-DMb1 | Ube2c | C1r |
| Itga4 | Carc15 (Nod2) | Jak1 | Ptpn6 | Batf | Ccl9 | Ednrb | H2-Ea | Ube2d3 | H2-Bf |
| Itga5 | Cd14 | Jak2 | Ptpn9 | Bcl3 | Ccl12 | Ifnar1 | H2-Eb1 | Ube2e2 | F10 |
| Itgal | Cias1 (Nlrp3) | Lck | Ptpn12 | Bcl7c | Ccl17 | Ifnar2 | H2-M3 | Ube2j1 | Mmp9 |
| Itgax | Clec2d | Map3k7ip2 | Bcl10 | Ccl22 | Ifngr2 | H2-Q10 | Ube2j2 | Mmp14 | |
| Itgb3 | Clec4a2 | Map3k8 (Tpl2) | Cebpb | Ccl24 | Il1rl1 | H2-Q7 | Ube2l6 | Mmp25 | |
| Vcam1 | Clec4d | Mapkapk2 | Cebpd | Ccrl2 | Il2rg | Psma3 | Ube2m | Nos2 | |
| Clec4e | Myd88 | Cited2 | Csf2 | Il4ra | Psma4 | Ube2r2 | Pde4b | ||
| Eif2ak2 (Pkr) | Pias1 | Hmgb2 | Cklfsf3 | Il10rb | Psma5 | Ube2v1 | Pld2 | ||
| Fcer1g | Prkr | Ikbke | Cksfs6 | Il13ra1 | Psma6 | Ubl3 | Ptger4 | ||
| Fcgr2b | Ptk2 | Irf1 | Cklfsf7 | Pdfrl | Psmb7 | Ubtd1 | Ptges | ||
| Frp1 | Ripk2 | Irf2 | Cxcl2 | Ptafr | Psmb8 | Ufm1 | Ptgir | ||
| Fpr-rs2 | Socs1 | Irf5 | Cxcl5 | Tnfrsf1a | Psmb9 | Usp12 | Ptgs2 | ||
| Ifih1 (Mda5) | Stk19 | Irf7 | Cxcl12 | Tnfrsf14 | Psmb10 | Usp18 | Sod2 | ||
| Ly96 (Md-2) | Syk | Junb | Cxcl16 | Psme1 | Usp24 | Txn1 | |||
| Mefv (Pyrin) | Tank | Klf6 | Cx3cl1 | Psme2b | Usp42 | Tnfrsf5 (Cd40) | |||
| Msr1 | Tbk1 | Nfkb1 | Edn1 | Tap1 | |||||
| Pycard | Ticam2 | Nfkb2 | Il1a | Tap2 | |||||
| Scarb2 | Traf1 | Nfkbib | Il1rn | Tapbp | |||||
| Ddx58 (RIG-l) | Trim30 | Nfkbie | Il6 | Tapbpl | |||||
| Tlr1 | Nfkbiz | Il12a | |||||||
| Tlr2 | Pias1 | Il12b | |||||||
| Tlr3 | Rel | Il13ra1 | |||||||
| Tlr6 | Rela | Il15 | |||||||
| Tlr7 | Relb | Il18 | |||||||
| Tlr9 | Spic | Il23a | |||||||
| Stat3 | Il27 | ||||||||
| Stat5a | Inhba | ||||||||
| Ltb | |||||||||
| Pbef1 | |||||||||
| Tnf | |||||||||
| Tmpo | |||||||||
| Tnfaip3 (A20) | |||||||||
| Tnfsf4 (OX-40L) | |||||||||
| Tnfsf9 (4-1BBL) |