Mass spectrometry and a proteomic screen of Vif-Flag–transfected cells
Common name . | No. of peptides matched . | Mascot score . |
---|---|---|
hnRNP L | 127 | 2317 |
hnRNP U | 115 | 2005 |
Spliceosomal protein | 4 | 132 |
PRP19 | 8 | 123 |
Cullin-associated protein | 13 | 247 |
Heat-shock protein | 20 | 429 |
DHX9 protein | 5 | 44 |
Gu protein | 26 | 437 |
Brd4 | 15 | 196 |
Cdk9 | 4 | 93 |
Common name . | No. of peptides matched . | Mascot score . |
---|---|---|
hnRNP L | 127 | 2317 |
hnRNP U | 115 | 2005 |
Spliceosomal protein | 4 | 132 |
PRP19 | 8 | 123 |
Cullin-associated protein | 13 | 247 |
Heat-shock protein | 20 | 429 |
DHX9 protein | 5 | 44 |
Gu protein | 26 | 437 |
Brd4 | 15 | 196 |
Cdk9 | 4 | 93 |
Known and novel cellular proteins and RNP partners of Vif were identified by mass spectrometry in Vif-Flag–transfected HeLa cells. Using mass spectrometry, we identified two different groups of proteins with which Vif interacts: the first group contained a number of RNA-associated proteins (eg, ribonucleoproteins hnRNP U and hnRNP L), RNA helicases (DHX9 and Gu), and some pre-mRNA splicing factors (PRP9, spliceosomal protein). The second group included two cell-cycle regulatory proteins, Cdk9 and Brd4. The criteria for protein identification were more than 2 peptides matched and a mascot score > 35.