Table 1

Mass spectrometry and a proteomic screen of Vif-Flag–transfected cells

Common nameNo. of peptides matchedMascot score
hnRNP L 127 2317 
hnRNP U 115 2005 
Spliceosomal protein 132 
PRP19 123 
Cullin-associated protein 13 247 
Heat-shock protein 20 429 
DHX9 protein 44 
Gu protein 26 437 
Brd4 15 196 
Cdk9 93 
Common nameNo. of peptides matchedMascot score
hnRNP L 127 2317 
hnRNP U 115 2005 
Spliceosomal protein 132 
PRP19 123 
Cullin-associated protein 13 247 
Heat-shock protein 20 429 
DHX9 protein 44 
Gu protein 26 437 
Brd4 15 196 
Cdk9 93 

Known and novel cellular proteins and RNP partners of Vif were identified by mass spectrometry in Vif-Flag–transfected HeLa cells. Using mass spectrometry, we identified two different groups of proteins with which Vif interacts: the first group contained a number of RNA-associated proteins (eg, ribonucleoproteins hnRNP U and hnRNP L), RNA helicases (DHX9 and Gu), and some pre-mRNA splicing factors (PRP9, spliceosomal protein). The second group included two cell-cycle regulatory proteins, Cdk9 and Brd4. The criteria for protein identification were more than 2 peptides matched and a mascot score > 35.

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