Table 2

Gene Set Enrichment Analysis of leukemic LGLs compared with normal activated PBMCs (EDG Pathway)

Gene symbolDescriptionRunning ESCore enrichment
NGFR Nerve growth factor receptor (TNFR superfamily, member 16) 0.07697 Yes 
NTF3 Neurotrophin 3 0.156094 Yes 
PLCB1 Phospholipase C, beta 1 (phosphoinositide-specific) 0.200503 Yes 
SKIP Sphingosine kinase interacting protein 0.25146 Yes 
PDGFA Platelet-derived growth factor alpha polypeptide 0.286498 Yes 
PIK3R1 Phosphoinositide-3-kinase, regulatory subunit 1 (p85 alpha) 0.330995 Yes 
PTK2 PTK2 protein tyrosine kinase 2 0.363285 Yes 
ASAH1 N-acylsphingosine amidohydrolase (acid ceramidase) 1 0.413042 Yes 
EDG8 Endothelial differentiation, sphingolipid G-protein–coupled receptor, 8 0.420597 Yes 
SMPD2 Sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) 0.431073 Yes 
SPHK1 Sphingosine kinase 1 0.461875 Yes 
SMPD1 Sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingomyelinase) 0.489334 Yes 
SRC V-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 0.447001 No 
ITGB3 Integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) 0.458506 No 
AKT1 V-akt murine thymoma viral oncogene homolog 1 0.465336 No 
PRKCB1 Protein kinase C, beta 1 0.401243 No 
ITGAV Integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51) 0.417259 No 
ADCY1 Adenylate cyclase 1 (brain) 0.340516 No 
MAPK1 Mitogen-activated protein kinase 1 0.269841 No 
RAC1 Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP-binding protein Rac1) 0.252438 No 
PIK3CA Phosphoinositide-3-kinase, catalytic, alpha polypeptide 0.23775 No 
VEGF Vascular endothelial growth factor 0.226998 No 
GNAI1 Guanine nucleotide–binding protein (G-protein), alpha-inhibiting activity polypeptide 1 0.218014 No 
GNGT1 Guanine nucleotide–binding protein (G-protein), gamma-transducing activity polypeptide 1 0.18675 No 
PDGFRA Platelet-derived growth factor receptor, alpha polypeptide 0.179572 No 
EDG1 Endothelial differentiation, sphingolipid G-protein–coupled receptor, 1 0.169923 No 
GNB1 Guanine nucleotide binding protein (G-protein), beta polypeptide 1 0.116622 No 
PRKCA Protein kinase C, alpha −0.02572 No 
MAPK3 Mitogen-activated protein kinase 3 0.01941 No 
Gene symbolDescriptionRunning ESCore enrichment
NGFR Nerve growth factor receptor (TNFR superfamily, member 16) 0.07697 Yes 
NTF3 Neurotrophin 3 0.156094 Yes 
PLCB1 Phospholipase C, beta 1 (phosphoinositide-specific) 0.200503 Yes 
SKIP Sphingosine kinase interacting protein 0.25146 Yes 
PDGFA Platelet-derived growth factor alpha polypeptide 0.286498 Yes 
PIK3R1 Phosphoinositide-3-kinase, regulatory subunit 1 (p85 alpha) 0.330995 Yes 
PTK2 PTK2 protein tyrosine kinase 2 0.363285 Yes 
ASAH1 N-acylsphingosine amidohydrolase (acid ceramidase) 1 0.413042 Yes 
EDG8 Endothelial differentiation, sphingolipid G-protein–coupled receptor, 8 0.420597 Yes 
SMPD2 Sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) 0.431073 Yes 
SPHK1 Sphingosine kinase 1 0.461875 Yes 
SMPD1 Sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingomyelinase) 0.489334 Yes 
SRC V-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) 0.447001 No 
ITGB3 Integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) 0.458506 No 
AKT1 V-akt murine thymoma viral oncogene homolog 1 0.465336 No 
PRKCB1 Protein kinase C, beta 1 0.401243 No 
ITGAV Integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51) 0.417259 No 
ADCY1 Adenylate cyclase 1 (brain) 0.340516 No 
MAPK1 Mitogen-activated protein kinase 1 0.269841 No 
RAC1 Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP-binding protein Rac1) 0.252438 No 
PIK3CA Phosphoinositide-3-kinase, catalytic, alpha polypeptide 0.23775 No 
VEGF Vascular endothelial growth factor 0.226998 No 
GNAI1 Guanine nucleotide–binding protein (G-protein), alpha-inhibiting activity polypeptide 1 0.218014 No 
GNGT1 Guanine nucleotide–binding protein (G-protein), gamma-transducing activity polypeptide 1 0.18675 No 
PDGFRA Platelet-derived growth factor receptor, alpha polypeptide 0.179572 No 
EDG1 Endothelial differentiation, sphingolipid G-protein–coupled receptor, 1 0.169923 No 
GNB1 Guanine nucleotide binding protein (G-protein), beta polypeptide 1 0.116622 No 
PRKCA Protein kinase C, alpha −0.02572 No 
MAPK3 Mitogen-activated protein kinase 3 0.01941 No 

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