Chromosomal regions with parametric lod score effects greater than 1.9 in the screening linkage analysis of lupus pedigrees containing thrombocytopenia
Region . | Marker . | Population . | lod Score . | Model . | θ . | α . |
---|---|---|---|---|---|---|
1p36 | D1s1597 | All | 2.025 | R100 | 0 | 0.37 |
1p36 | D1s1597 | AA | 2.614 | R100 | 0 | 0.70 |
1q22-24 | FcγRIIA | All | 3.6473-150 | R100 | 0 | 0.58 |
1q22-24 | FcγRIIA | EA | 2.222 | R100 | 0 | 0.58 |
1q22-24 | FcγRIII | All | 2.203 | R50 | 0.05 | 1.0 |
2q34 | D2s1384 | All | 2.353 | D90 | 0.10 | 1.0 |
10q22-23 | D10s2470 | EA | 2.506 | D50 | 0 | 1.0 |
11p13 | D11s1392 | All | 2.986 | Dmix | 0 | 0.58 |
11p13 | D11s1392 | AA | 3.8033-150 | Dmix | 0 | 1.0 |
11p11.2 | D11s1985 | AA | 1.962 | Dmix | 0 | 0.69 |
11q14 | Ds11s2002 | AA | 2.086 | D90 | 0 | 0.48 |
17p13.3 | D17s1308 | EA | 2.292 | R100 | 0 | 0.54 |
18q22.1 | D18s878 | AA | 1.979 | R100 | 0 | 0.35 |
Region . | Marker . | Population . | lod Score . | Model . | θ . | α . |
---|---|---|---|---|---|---|
1p36 | D1s1597 | All | 2.025 | R100 | 0 | 0.37 |
1p36 | D1s1597 | AA | 2.614 | R100 | 0 | 0.70 |
1q22-24 | FcγRIIA | All | 3.6473-150 | R100 | 0 | 0.58 |
1q22-24 | FcγRIIA | EA | 2.222 | R100 | 0 | 0.58 |
1q22-24 | FcγRIII | All | 2.203 | R50 | 0.05 | 1.0 |
2q34 | D2s1384 | All | 2.353 | D90 | 0.10 | 1.0 |
10q22-23 | D10s2470 | EA | 2.506 | D50 | 0 | 1.0 |
11p13 | D11s1392 | All | 2.986 | Dmix | 0 | 0.58 |
11p13 | D11s1392 | AA | 3.8033-150 | Dmix | 0 | 1.0 |
11p11.2 | D11s1985 | AA | 1.962 | Dmix | 0 | 0.69 |
11q14 | Ds11s2002 | AA | 2.086 | D90 | 0 | 0.48 |
17p13.3 | D17s1308 | EA | 2.292 | R100 | 0 | 0.54 |
18q22.1 | D18s878 | AA | 1.979 | R100 | 0 | 0.35 |
Six models of inheritance were used, including autosomal dominant with 90% penetrance (D90), autosomal recessive with 100% penetrance (R100), autosomal dominant with 50% penetrance (D50), autosomal dominant with 97% penetrance in women and 42% in men (Dmix), autosomal recessive with 97% penetrance in women and 42% in men (Rmix), and autosomal recessive with 50% penetrance (R50). Lod scores were maximized at each of the 307 markers against distance of a marker from a putative disease gene (theta, θ) and heterogeneity (alpha, α).
Effect exceeds threshold for an established linkage (lod ≥ 3.3) as suggested by Lander and Kruglyak.36 All other effects exceed the threshold for a suggestive linkage (lod ≥ 1.9) as suggested by Lander and Kruglyak.36