Table 3.

Chromosomal regions with parametric lod score effects greater than 1.9 in the screening linkage analysis of lupus pedigrees containing thrombocytopenia

RegionMarkerPopulationlod ScoreModelθα
1p36 D1s1597 All 2.025 R100 0.37 
1p36 D1s1597 AA 2.614 R100 0.70 
1q22-24 FcγRIIA All 3.6473-150 R100 0.58 
1q22-24 FcγRIIA EA 2.222 R100 0.58 
1q22-24 FcγRIII All 2.203 R50 0.05 1.0 
2q34 D2s1384 All 2.353 D90 0.10 1.0 
10q22-23 D10s2470 EA 2.506 D50 1.0 
11p13 D11s1392 All 2.986 Dmix 0.58 
11p13 D11s1392 AA 3.8033-150 Dmix 1.0 
11p11.2 D11s1985 AA 1.962 Dmix 0.69 
11q14 Ds11s2002 AA 2.086 D90 0.48 
17p13.3 D17s1308 EA 2.292 R100 0.54 
18q22.1 D18s878 AA 1.979 R100 0.35 
RegionMarkerPopulationlod ScoreModelθα
1p36 D1s1597 All 2.025 R100 0.37 
1p36 D1s1597 AA 2.614 R100 0.70 
1q22-24 FcγRIIA All 3.6473-150 R100 0.58 
1q22-24 FcγRIIA EA 2.222 R100 0.58 
1q22-24 FcγRIII All 2.203 R50 0.05 1.0 
2q34 D2s1384 All 2.353 D90 0.10 1.0 
10q22-23 D10s2470 EA 2.506 D50 1.0 
11p13 D11s1392 All 2.986 Dmix 0.58 
11p13 D11s1392 AA 3.8033-150 Dmix 1.0 
11p11.2 D11s1985 AA 1.962 Dmix 0.69 
11q14 Ds11s2002 AA 2.086 D90 0.48 
17p13.3 D17s1308 EA 2.292 R100 0.54 
18q22.1 D18s878 AA 1.979 R100 0.35 

Six models of inheritance were used, including autosomal dominant with 90% penetrance (D90), autosomal recessive with 100% penetrance (R100), autosomal dominant with 50% penetrance (D50), autosomal dominant with 97% penetrance in women and 42% in men (Dmix), autosomal recessive with 97% penetrance in women and 42% in men (Rmix), and autosomal recessive with 50% penetrance (R50). Lod scores were maximized at each of the 307 markers against distance of a marker from a putative disease gene (theta, θ) and heterogeneity (alpha, α).

F3-150

Effect exceeds threshold for an established linkage (lod ≥ 3.3) as suggested by Lander and Kruglyak.36 All other effects exceed the threshold for a suggestive linkage (lod ≥ 1.9) as suggested by Lander and Kruglyak.36 

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