Primers used for SSCP and direct sequencing analysis
Forward primers* . | Reverse primers* . | Hybridization temperature, °C . | Size of PCR product, bp . | Restriction enzyme used (sizes of products after digestion, bp) . |
---|---|---|---|---|
(EX1S) 5′-GTTGGGCTGGTGGAGGAGT-3′ | (EX1AS) 5′-GACACCCCAAGGGGACTATC-3′ | 64 | 310 | N/A |
(EX2S) 5′-CTCTCTCCAGACCCCAGGA-3′ | (EX2AS) 5′-CCTGACACCTCCTCTCTCA-3′ | 64 | 190 | N/A |
(EX3S) 5′-ACAGGCCTGGCAGTCTC-3′ | (EX3AS) 5′-CTGAGCTCACCCCATACTG-3′ | 64 | 270 | N/A |
(EX4S) 5′-TGGCTGCTGGGTCAGTT-3′ | (EX4AS) 5′-CTTCCTCCAGTCTCCTGTGC-3′ | 60 | 400 | RsaI (180 and 220) |
(EX5S) 5′-GGCGAGGGCTTAATGCTAT-3′ | (EX5AS) 5′-GGGGCGGCTCCCATGTGG-3′ | 60 | 440 | AluI (140 and 300) |
Forward primers* . | Reverse primers* . | Hybridization temperature, °C . | Size of PCR product, bp . | Restriction enzyme used (sizes of products after digestion, bp) . |
---|---|---|---|---|
(EX1S) 5′-GTTGGGCTGGTGGAGGAGT-3′ | (EX1AS) 5′-GACACCCCAAGGGGACTATC-3′ | 64 | 310 | N/A |
(EX2S) 5′-CTCTCTCCAGACCCCAGGA-3′ | (EX2AS) 5′-CCTGACACCTCCTCTCTCA-3′ | 64 | 190 | N/A |
(EX3S) 5′-ACAGGCCTGGCAGTCTC-3′ | (EX3AS) 5′-CTGAGCTCACCCCATACTG-3′ | 64 | 270 | N/A |
(EX4S) 5′-TGGCTGCTGGGTCAGTT-3′ | (EX4AS) 5′-CTTCCTCCAGTCTCCTGTGC-3′ | 60 | 400 | RsaI (180 and 220) |
(EX5S) 5′-GGCGAGGGCTTAATGCTAT-3′ | (EX5AS) 5′-GGGGCGGCTCCCATGTGG-3′ | 60 | 440 | AluI (140 and 300) |
EX indicates exon, followed by exon number; S, sense; and AS, antisense.