Logistic regression and haplotype results for genes with a P value of .001 or less
| Gene‖ . | Logistic regression results* . | Haplotype results† . | SNPs 0.05 or less, no. . | Subtype results ‡P . | |||||
|---|---|---|---|---|---|---|---|---|---|
| SNPs, no. . | P . | No. SNPs . | No. haplotypes . | Global P . | CLL/SLL . | FL . | DLBCL . | ||
| CREB1 | 4 | .0001 | 7 | 5 | .001 | 5 | .01 | .02 | .1 |
| FGG | 1 | .0001 | 1 | NA | NA | 1 | .0004 | .001 | .6 |
| MAP3K5 | 12 | .0004 | 21 | ND | ND | 5 | .05 | .009 | .2 |
| RIPK3 | 3 | .0005 | 4 | 6 | .001 | 1 | .001 | .3 | .2 |
| LSP1 | 2 | .0008 | 2 | 3 | .003 | 1 | .002 | .03 | .2 |
| TRAF1 | 2 | .001 | 5 | 4 | .01 | 3 | .0001 | .3 | .4 |
| DUSP2 | 1 | .001 | 1 | NA | NA | 1 | .08 | .2 | .04 |
| ITGB3 | 4 | .003 | 12 | 17 | .001 | 5 | .3 | .02 | .05 |
| Gene‖ . | Logistic regression results* . | Haplotype results† . | SNPs 0.05 or less, no. . | Subtype results ‡P . | |||||
|---|---|---|---|---|---|---|---|---|---|
| SNPs, no. . | P . | No. SNPs . | No. haplotypes . | Global P . | CLL/SLL . | FL . | DLBCL . | ||
| CREB1 | 4 | .0001 | 7 | 5 | .001 | 5 | .01 | .02 | .1 |
| FGG | 1 | .0001 | 1 | NA | NA | 1 | .0004 | .001 | .6 |
| MAP3K5 | 12 | .0004 | 21 | ND | ND | 5 | .05 | .009 | .2 |
| RIPK3 | 3 | .0005 | 4 | 6 | .001 | 1 | .001 | .3 | .2 |
| LSP1 | 2 | .0008 | 2 | 3 | .003 | 1 | .002 | .03 | .2 |
| TRAF1 | 2 | .001 | 5 | 4 | .01 | 3 | .0001 | .3 | .4 |
| DUSP2 | 1 | .001 | 1 | NA | NA | 1 | .08 | .2 | .04 |
| ITGB3 | 4 | .003 | 12 | 17 | .001 | 5 | .3 | .02 | .05 |
FL indicates follicular lymphoma; NA, not applicable; and ND, not done.
Number of SNPs used in the logistic regression model; P value from the global test.
Number of SNPs, haplotypes, and global P value from the haplotype model.
P value from logistic regression models for the NHL subtypes of CLL/SLL, FL, and DLBCL.
Gene name as defined in Entrez Gene.