Table 1.

Gene target prediction of differentially expressed microRNAs

Gene annotation (symbol)microRNA IDTargetScan scoremiRanda energy score
ADP ribosylation factor 5 (ARF5) hsa-miR-3120-3p_1ss9GT 87 –13.5 
FKBP prolyl isomerase 4 (FKBP4) PC-3p-208867_70 93 –19.72 
FKBP prolyl isomerase 4 (FKBP4) hsa-miR-1255a 73 –44.01 
cytochrome p450 family 26 subfamily B member 1 (CYP26B1) hsa-miR-1255a 50 –18.09 
cytochrome p450 family 26 subfamily B member 1 (CYP26B1) hsa-miR-1304-3p_1ss13CA 82 –20.50 
cytochrome p450 family 26 subfamily B member 1 (CYP26B1) hsa-miR-20a-5p 66 –30.95 
cytochrome p450 family 26 subfamily B member 1 (CYP26B1) hsa-miR-3120-3p_1ss9GT 81 –12.45 
cytochrome p450 family 26 subfamily B member 1 (CYP26B1) hsa-miR-532-3p 63 –58.52 
NADH-ubiquinone oxidoreductase complex assembly factor 7 (NDUFAF7) hsa-miR-941 99 –20.54 
alpha-l-fucosidase 2 (FUCA2) PC-3p-208867_70 72 –12.18 
alpha-l-fucosidase 2 (FUCA2) hsa-miR-1304-3p_1ss13CA 81 –18.62 
alpha-l-fucosidase 2 (FUCA2) hsa-miR-139-5p_1ss9GT 79 –27.04 
alpha-l-fucosidase 2 (FUCA2) hsa-miR-142-3p_R-1 98 –19.16 
alpha-l-fucosidase 2 (FUCA2) hsa-miR-20a-5p 74 –30.40 
heparan sulfate glucosamine 3-sulfotransferase 1 (HS3ST1) PC-3p-208867_70 99 –11.24 
heparan sulfate glucosamine3-sulfotransferase1 (HS3ST1) hsa-miR-1304-3p_1ss13CA 77 –15.99 
heparan sulfate glucosamine3-sulfotransferase1 (HS3ST1) hsa-miR-26a-1-3p 89 –25.90 
heparan sulfate glucosamine3-sulfotransferase1 (HS3ST1) hsa-miR-3120-3p_1ss9GT 72 –16.25 
semaphorin 3F (SEMA3F) hsa-miR-25-5p_R+2 94 –18.49 
semaphorin 3F (SEMA3F) hsa-miR-3158-3p_R-1 74 –23.37 
CF transmembrane conductance regulator (CFTR) PC-3p-48641_285 86 –14.45 
cytochrome p450 family 51 subfamily A member 1 (CYP51A1) hsa-miR-1304-3p_1ss13CA 96 –12.87 
ubiquitin specific peptidase 28 (USP28) hsa-miR-1304-3p_1ss13CA 93 –15.17 
ubiquitin specific peptidase 28 (USP28) hsa-miR-301a-3p 95 –15.63 
ubiquitin specific peptidase 28 (USP28) hsa-miR-454-3p_R+2 93 –13.24 
sperm tailPG-richrepeat containing 1 (STPG1) PC-3p-208867_70 58 –19.70 
sperm tailPG-richrepeat containing 1 (STPG1) hsa-miR-532-3p 94 –21.41 
solute carrier family 7 member 2 (SLC7A2) PC-3p-48641_285 61 –16.32 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-1304-3p_1ss13CA 94 –56.97 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-146a-5p_1ss9GT 61 –12.98 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-20a-5p 60 –15.71 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-26a-1-3p 69 –24.58 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-3120-3p_1ss9GT 57 –114.84 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-486-5p 87 –17.37 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-532-3p 90 –40.46 
heat shock protein family B (small) member 6 (HSPB6) hsa-miR-25-5p_R+2 89 –38.41 
heat shock protein family B (small) member 6 (HSPB6) hsa-miR-6735-5p_R-4 90 –29.25 
pyruvate dehydrogenase kinase 4 (PDK4) hsa-miR-532-3p 83 –18.45 
USH1 protein network component harmonin (USH1C) hsa-miR-142-3p_R-1 78 –19.36 
USH1 protein network component harmonin (USH1C) hsa-miR-6735-5p_R-4 75 –31.63 
RAS likeproto-oncogeneA (RALA) hsa-miR-139-5p_1ss9GT 60 –11.26 
RAS likeproto-oncogeneA (RALA) hsa-miR-301a-3p 89 –14.09 
RAS likeproto-oncogeneA (RALA) hsa-miR-454-3p_R+2 89 –17.18 
RAS likeproto-oncogeneA (RALA) hsa-miR-532-3p 77 –28.50 
B cell receptor associated protein 29 (BCAP29) hsa-miR-301a-3p 59 –26.11 
B cell receptor associated protein 29 (BCAP29) hsa-miR-454-3p_R+2 63 –26.93 
B cell receptor associated protein 29 (BCAP29) hsa-miR-6735-5p_R-4 64 –73.17 
BAR/IMD domain containing adaptor protein 2 like 1 (BAIAP2L1) hsa-miR-6735-5p_R-4 57 –65.25 
RNA polymerase II associated protein 3 (RPAP3) PC-3p-48641_285 95 –12.57 
RNA polymerase II associated protein 3 (RPAP3) hsa-miR-1255a 51 –18.99 
RNA polymerase II associated protein 3 (RPAP3) hsa-miR-139-5p_1ss9GT 71 –19.47 
uridine phosphorylase 2 (UPP2) hsa-miR-1255a 99 –11.09 
uridine phosphorylase 2 (UPP2) hsa-miR-146a-5p_1ss9GT 99 –12.59 
uridine phosphorylase 2 (UPP2) hsa-miR-26a-1-3p 50 –20.71 
homeobox A11 (HOXA11) hsa-miR-532-3p 79 –17.59 
C-X3-Cmotif chemokine ligand 1 (CX3CL1) hsa-miR-20a-5p 55 –13.69 
C-X3-Cmotif chemokine ligand 1 (CX3CL1) hsa-miR-6735-5p_R-4 71 –150.88 
CEA cell adhesion molecule 7 (CEACAM7) hsa-miR-3120-3p_1ss9GT 55 –19.40 
CEA cell adhesion molecule 7 (CEACAM7) hsa-miR-6735-5p_R-4 94 –17.76 
rhomboid domain containing 2 (RHBDD2) hsa-miR-6735-5p_R-4 86 –48.16 
oxysterol binding protein like 7 (OSBPL7) hsa-miR-1304-3p_1ss13CA 55 –23.05 
oxysterol binding protein like 7 (OSBPL7) hsa-miR-6735-5p_R-4 62 –52.65 
NADH: ubiquinone oxidoreductase subunit AB1 (NDUFAB1) hsa-miR-1304-3p_1ss13CA 77 –20.64 
integrin subunit alpha 3 (ITGA3) hsa-miR-3120-3p_1ss9GT 74 –14.05 
cryptochrome circadian regulator 1 (CRY1) hsa-miR-146a-5p_1ss9GT 91 –20.38 
cryptochrome circadian regulator 1 (CRY1) hsa-miR-301a-3p 86 –14.94 
cryptochrome circadian regulator 1 (CRY1) hsa-miR-454-3p_R+2 82 –10.37 
STARD3 N-terminal like (STARD3NL) PC-3p-48641_285 85 –22.34 
STARD3 N-terminal like (STARD3NL) hsa-miR-1304-3p_1ss13CA 97 –15.16 
CD74 molecule (CD74) PC-3p-208867_70 60 –19.51 
CD74 molecule (CD74) hsa-miR-1255a 85 –43.07 
CD74 molecule (CD74) hsa-miR-532-3p 83 –17.95 
synaptophysin like 1 (SYPL1) hsa-miR-142-3p_R-1 83 –14.84 
synaptophysin like 1 (SYPL1) hsa-miR-3120-3p_1ss9GT 62 –10.73 
synaptophysin like 1 (SYPL1) hsa-miR-486-5p 87 –12.65 
RAN binding protein 9 (RANBP9) hsa-miR-532-3p 71 –23.39 
pleckstrin homology and RhoGEF domain containing G6 (PLEKHG6) hsa-miR-532-3p 58 –24.82 
pleckstrin homology and RhoGEF domain containing G6 (PLEKHG6) hsa-miR-6735-5p_R-4 76 –44.22 
vacuolar protein sorting 13 homolog D (VPS13D) PC-3p-48641_285 67 –18.56 
vacuolar protein sorting 13 homolog D (VPS13D) hsa-miR-301a-3p 98 –17.82 
vacuolar protein sorting 13 homolog D (VPS13D) hsa-miR-454-3p_R+2 97 –14.07 
tetraspanin 9 (TSPAN9) hsa-miR-1304-3p_1ss13CA 51 –36.07 
tetraspanin 9 (TSPAN9) hsa-miR-6735-5p_R-4 50 –124.32 
glutaminyl-peptidecyclotransferase-like(QPCTL) PC-3p-208867_70 72 –13.72 
glutaminyl-peptidecyclotransferase-like(QPCTL) hsa-miR-1304-3p_1ss13CA 59 –24.63 
glutaminyl-peptidecyclotransferase-like(QPCTL) hsa-miR-25-5p_R+2 83 –21.50 
HIVEP zinc finger 2 (HIVEP2) hsa-miR-301a-3p 94 –11.43 
HIVEP zinc finger 2 (HIVEP2) hsa-miR-454-3p_R+2 94 –15.18 
HIVEP zinc finger 2 (HIVEP2) hsa-miR-532-3p 76 –47.97 
ubiquitin protein ligase E3 component n-recognin 7 (UBR7) hsa-miR-139-5p_1ss9GT 57 –11.59 
ubiquitin protein ligase E3 component n-recognin 7 (UBR7) hsa-miR-301a-3p 88 –27.41 
ubiquitin protein ligase E3 component n-recognin 7 (UBR7) hsa-miR-454-3p_R+2 89 –27.50 
indolethylamine N-methyltransferase (INMT) hsa-miR-486-5p 55 –15.57 
abhydrolase domain containing 5, lysophosphatidic acid acyltransferase (ABHD5) hsa-miR-146a-5p_1ss9GT 94 –18.01 
Gprotein-coupledreceptor class C group 5 member A (GPRC5A) hsa-miR-1255a 94 –51.69 
Gprotein-coupledreceptor class C group 5 member A (GPRC5A) hsa-miR-142-3p_R-1 63 –34.07 
Gprotein-coupledreceptor class C group 5 member A (GPRC5A) hsa-miR-3120-3p_1ss9GT 55 –31.85 
Gprotein-coupledreceptor class C group 5 member A (GPRC5A) hsa-miR-532-3p 93 –50.65 
cytochrome c oxidase assembly homolog COX15 (COX15) PC-3p-208867_70 83 –17.63 
Gene annotation (symbol)microRNA IDTargetScan scoremiRanda energy score
ADP ribosylation factor 5 (ARF5) hsa-miR-3120-3p_1ss9GT 87 –13.5 
FKBP prolyl isomerase 4 (FKBP4) PC-3p-208867_70 93 –19.72 
FKBP prolyl isomerase 4 (FKBP4) hsa-miR-1255a 73 –44.01 
cytochrome p450 family 26 subfamily B member 1 (CYP26B1) hsa-miR-1255a 50 –18.09 
cytochrome p450 family 26 subfamily B member 1 (CYP26B1) hsa-miR-1304-3p_1ss13CA 82 –20.50 
cytochrome p450 family 26 subfamily B member 1 (CYP26B1) hsa-miR-20a-5p 66 –30.95 
cytochrome p450 family 26 subfamily B member 1 (CYP26B1) hsa-miR-3120-3p_1ss9GT 81 –12.45 
cytochrome p450 family 26 subfamily B member 1 (CYP26B1) hsa-miR-532-3p 63 –58.52 
NADH-ubiquinone oxidoreductase complex assembly factor 7 (NDUFAF7) hsa-miR-941 99 –20.54 
alpha-l-fucosidase 2 (FUCA2) PC-3p-208867_70 72 –12.18 
alpha-l-fucosidase 2 (FUCA2) hsa-miR-1304-3p_1ss13CA 81 –18.62 
alpha-l-fucosidase 2 (FUCA2) hsa-miR-139-5p_1ss9GT 79 –27.04 
alpha-l-fucosidase 2 (FUCA2) hsa-miR-142-3p_R-1 98 –19.16 
alpha-l-fucosidase 2 (FUCA2) hsa-miR-20a-5p 74 –30.40 
heparan sulfate glucosamine 3-sulfotransferase 1 (HS3ST1) PC-3p-208867_70 99 –11.24 
heparan sulfate glucosamine3-sulfotransferase1 (HS3ST1) hsa-miR-1304-3p_1ss13CA 77 –15.99 
heparan sulfate glucosamine3-sulfotransferase1 (HS3ST1) hsa-miR-26a-1-3p 89 –25.90 
heparan sulfate glucosamine3-sulfotransferase1 (HS3ST1) hsa-miR-3120-3p_1ss9GT 72 –16.25 
semaphorin 3F (SEMA3F) hsa-miR-25-5p_R+2 94 –18.49 
semaphorin 3F (SEMA3F) hsa-miR-3158-3p_R-1 74 –23.37 
CF transmembrane conductance regulator (CFTR) PC-3p-48641_285 86 –14.45 
cytochrome p450 family 51 subfamily A member 1 (CYP51A1) hsa-miR-1304-3p_1ss13CA 96 –12.87 
ubiquitin specific peptidase 28 (USP28) hsa-miR-1304-3p_1ss13CA 93 –15.17 
ubiquitin specific peptidase 28 (USP28) hsa-miR-301a-3p 95 –15.63 
ubiquitin specific peptidase 28 (USP28) hsa-miR-454-3p_R+2 93 –13.24 
sperm tailPG-richrepeat containing 1 (STPG1) PC-3p-208867_70 58 –19.70 
sperm tailPG-richrepeat containing 1 (STPG1) hsa-miR-532-3p 94 –21.41 
solute carrier family 7 member 2 (SLC7A2) PC-3p-48641_285 61 –16.32 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-1304-3p_1ss13CA 94 –56.97 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-146a-5p_1ss9GT 61 –12.98 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-20a-5p 60 –15.71 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-26a-1-3p 69 –24.58 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-3120-3p_1ss9GT 57 –114.84 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-486-5p 87 –17.37 
solute carrier family 7 member 2 (SLC7A2) hsa-miR-532-3p 90 –40.46 
heat shock protein family B (small) member 6 (HSPB6) hsa-miR-25-5p_R+2 89 –38.41 
heat shock protein family B (small) member 6 (HSPB6) hsa-miR-6735-5p_R-4 90 –29.25 
pyruvate dehydrogenase kinase 4 (PDK4) hsa-miR-532-3p 83 –18.45 
USH1 protein network component harmonin (USH1C) hsa-miR-142-3p_R-1 78 –19.36 
USH1 protein network component harmonin (USH1C) hsa-miR-6735-5p_R-4 75 –31.63 
RAS likeproto-oncogeneA (RALA) hsa-miR-139-5p_1ss9GT 60 –11.26 
RAS likeproto-oncogeneA (RALA) hsa-miR-301a-3p 89 –14.09 
RAS likeproto-oncogeneA (RALA) hsa-miR-454-3p_R+2 89 –17.18 
RAS likeproto-oncogeneA (RALA) hsa-miR-532-3p 77 –28.50 
B cell receptor associated protein 29 (BCAP29) hsa-miR-301a-3p 59 –26.11 
B cell receptor associated protein 29 (BCAP29) hsa-miR-454-3p_R+2 63 –26.93 
B cell receptor associated protein 29 (BCAP29) hsa-miR-6735-5p_R-4 64 –73.17 
BAR/IMD domain containing adaptor protein 2 like 1 (BAIAP2L1) hsa-miR-6735-5p_R-4 57 –65.25 
RNA polymerase II associated protein 3 (RPAP3) PC-3p-48641_285 95 –12.57 
RNA polymerase II associated protein 3 (RPAP3) hsa-miR-1255a 51 –18.99 
RNA polymerase II associated protein 3 (RPAP3) hsa-miR-139-5p_1ss9GT 71 –19.47 
uridine phosphorylase 2 (UPP2) hsa-miR-1255a 99 –11.09 
uridine phosphorylase 2 (UPP2) hsa-miR-146a-5p_1ss9GT 99 –12.59 
uridine phosphorylase 2 (UPP2) hsa-miR-26a-1-3p 50 –20.71 
homeobox A11 (HOXA11) hsa-miR-532-3p 79 –17.59 
C-X3-Cmotif chemokine ligand 1 (CX3CL1) hsa-miR-20a-5p 55 –13.69 
C-X3-Cmotif chemokine ligand 1 (CX3CL1) hsa-miR-6735-5p_R-4 71 –150.88 
CEA cell adhesion molecule 7 (CEACAM7) hsa-miR-3120-3p_1ss9GT 55 –19.40 
CEA cell adhesion molecule 7 (CEACAM7) hsa-miR-6735-5p_R-4 94 –17.76 
rhomboid domain containing 2 (RHBDD2) hsa-miR-6735-5p_R-4 86 –48.16 
oxysterol binding protein like 7 (OSBPL7) hsa-miR-1304-3p_1ss13CA 55 –23.05 
oxysterol binding protein like 7 (OSBPL7) hsa-miR-6735-5p_R-4 62 –52.65 
NADH: ubiquinone oxidoreductase subunit AB1 (NDUFAB1) hsa-miR-1304-3p_1ss13CA 77 –20.64 
integrin subunit alpha 3 (ITGA3) hsa-miR-3120-3p_1ss9GT 74 –14.05 
cryptochrome circadian regulator 1 (CRY1) hsa-miR-146a-5p_1ss9GT 91 –20.38 
cryptochrome circadian regulator 1 (CRY1) hsa-miR-301a-3p 86 –14.94 
cryptochrome circadian regulator 1 (CRY1) hsa-miR-454-3p_R+2 82 –10.37 
STARD3 N-terminal like (STARD3NL) PC-3p-48641_285 85 –22.34 
STARD3 N-terminal like (STARD3NL) hsa-miR-1304-3p_1ss13CA 97 –15.16 
CD74 molecule (CD74) PC-3p-208867_70 60 –19.51 
CD74 molecule (CD74) hsa-miR-1255a 85 –43.07 
CD74 molecule (CD74) hsa-miR-532-3p 83 –17.95 
synaptophysin like 1 (SYPL1) hsa-miR-142-3p_R-1 83 –14.84 
synaptophysin like 1 (SYPL1) hsa-miR-3120-3p_1ss9GT 62 –10.73 
synaptophysin like 1 (SYPL1) hsa-miR-486-5p 87 –12.65 
RAN binding protein 9 (RANBP9) hsa-miR-532-3p 71 –23.39 
pleckstrin homology and RhoGEF domain containing G6 (PLEKHG6) hsa-miR-532-3p 58 –24.82 
pleckstrin homology and RhoGEF domain containing G6 (PLEKHG6) hsa-miR-6735-5p_R-4 76 –44.22 
vacuolar protein sorting 13 homolog D (VPS13D) PC-3p-48641_285 67 –18.56 
vacuolar protein sorting 13 homolog D (VPS13D) hsa-miR-301a-3p 98 –17.82 
vacuolar protein sorting 13 homolog D (VPS13D) hsa-miR-454-3p_R+2 97 –14.07 
tetraspanin 9 (TSPAN9) hsa-miR-1304-3p_1ss13CA 51 –36.07 
tetraspanin 9 (TSPAN9) hsa-miR-6735-5p_R-4 50 –124.32 
glutaminyl-peptidecyclotransferase-like(QPCTL) PC-3p-208867_70 72 –13.72 
glutaminyl-peptidecyclotransferase-like(QPCTL) hsa-miR-1304-3p_1ss13CA 59 –24.63 
glutaminyl-peptidecyclotransferase-like(QPCTL) hsa-miR-25-5p_R+2 83 –21.50 
HIVEP zinc finger 2 (HIVEP2) hsa-miR-301a-3p 94 –11.43 
HIVEP zinc finger 2 (HIVEP2) hsa-miR-454-3p_R+2 94 –15.18 
HIVEP zinc finger 2 (HIVEP2) hsa-miR-532-3p 76 –47.97 
ubiquitin protein ligase E3 component n-recognin 7 (UBR7) hsa-miR-139-5p_1ss9GT 57 –11.59 
ubiquitin protein ligase E3 component n-recognin 7 (UBR7) hsa-miR-301a-3p 88 –27.41 
ubiquitin protein ligase E3 component n-recognin 7 (UBR7) hsa-miR-454-3p_R+2 89 –27.50 
indolethylamine N-methyltransferase (INMT) hsa-miR-486-5p 55 –15.57 
abhydrolase domain containing 5, lysophosphatidic acid acyltransferase (ABHD5) hsa-miR-146a-5p_1ss9GT 94 –18.01 
Gprotein-coupledreceptor class C group 5 member A (GPRC5A) hsa-miR-1255a 94 –51.69 
Gprotein-coupledreceptor class C group 5 member A (GPRC5A) hsa-miR-142-3p_R-1 63 –34.07 
Gprotein-coupledreceptor class C group 5 member A (GPRC5A) hsa-miR-3120-3p_1ss9GT 55 –31.85 
Gprotein-coupledreceptor class C group 5 member A (GPRC5A) hsa-miR-532-3p 93 –50.65 
cytochrome c oxidase assembly homolog COX15 (COX15) PC-3p-208867_70 83 –17.63 

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